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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015924743.1_cds_XP_016473033.1_65204
CDS Infomation

[gene=LOC107794990] [db_xref=GeneID:107794990] [protein=geranylgeranyl transferase type-2 subunit alpha-like isoform X2] [protein_id=XP_016473033.1] [location=complement(join(50996..51180,51576..51759,52388..52577,52671..53468,54746..54850,54934..55094,55887..56055,56155..56270))] [gbkey=CDS]
Sequence

ATGCACGGAAGACCACGCAAAGCTCCAACAACAGAAGAGCAAGAAGCTTCTGCTATCAAA
GCTTCCAAATTACGTTCTCTCCAATCCCAATTTCTCCAATTACATCACAACAAAATATAT
ACAAAGGAAGCATTAGATGTAAGTGCAAAGTTATTAGAGTCAAATCCTGAGTACTACACC
GCTTGGAATTACAGAAAACTTGCTGTCCAACATAATTTGAATCTACCTGAAGCTGACAAT
AATGAAGAGTCTATTAAATCAATTCTTGATGAAGAACTCAGATTGGTAGAGAATGCATTG
AAGAGGAATTTCAAGTCTTACGGAGCATGGCATCACCGTAAATGGGTGCTGAGTAAAGGG
CATTCTTCTACAGACAAGGAATTGTTGCTTCTGGGTAAGTTCCAGAAGGCAGACGCCCGC
AATTTCCATGCATGGAATTATAGAAGGTTTGTCACAGCACTGAAGAACATACCAGATGAG
AAGGAACTTGAATACACAACTGAAAGGATATATGACAATTTCAGCAACTATTCTGCTTGG
CACAACCGCAGTGTTCTTCTTTCTCATTTGCTGAAGGAAAAAGCAAAAGGATATTCTCCC
AAGGACAATGTATTTACAGAAGAGTACGAATTTGTGCGCAATGCTCTTTTCACAGATCCA
GATGATCAAAGTGGTTGGTTTTACCATCTTTGGCTTCTTGATCAGACAGTTAAACTAGAG
ACGTTGGTTTCTTCATGGCCACCTCATGGCTGTAATCTTTCCTTACCCATGGATGGTTCG
TTTGGGGATTGCTCTTTCTCACCCTTTACCAGTCTTCAATCTAATACTAGAACACTTCCG
CTTATTCTCTATTTCAGTGAAGTTGTTGAAAATATATGCTCATCTACAGTAGAAGTTGAA
TGTGAAAGTATCGTGAGTAATGAGCTCGTTTGGAGATCGCTCTCAGGAGATGAAACTGCG
TCTACCCACGCTTGGTTGACAGATCTTAATTTTCCAGAGGAACATGCAAATTCTTTAAAG
GCTTACCAAGTAAAGGTTAGCCTTGCTCGTTCTCAAGGCATTTTCTCTTCAACTGGCGTA
CATCATGGAAATTCTTCTCATATTGCATTTACAGTATCTATATCACCTTATCGTTCAGAA
CATGTTGACTTGAAAAATGAAGAGAAGATCTCTTGGAATGACGAAAGTTTCTGTACTCAT
GAAGCACAGTTTCTTGAGTCAGTTCTGGCTAACTTGTTCCATATAGAAAGAACCAAGGGA
GACGAAAAAGTGGTGGACTATCAGTGGAATGTTACGACCGTCGATAATGAGATAGCATAC
TATAGGGAGTTGTTAGCAACAATGAACTGTAAAATTGGGAAGCTGACACTTGCAAGACTG
CTGATGGCGCATGACACTTTAATGTCATATACTGGCACTAGTCATAGAAATTTTAGCCAC
CACACAGAAATTCTTCAGCTATATGATGATTTAAAGAAAATGGACCCAGCACATTTCCAC
TACTACCAAGATGAGTACAGTTTAGTACTTCTGAAACAGATAATCTCCAATCAAGACTTG
TTGCTAAAGCACTGCTGTAAATATAGGGATCCGTCTTCTCCAAAAATCAATAATTTTTGT
CTGCGGCTTAATGATCTCTCACTTTCACGTATTGGGTCTATGGAGAAACTTTTGTGGGTT
CAAGTCTTAGATCTCAGCAACAACCAACTTCAGTCACTTGAAGGAGGTCCGGCCAGCAAA
AGAACTCTAAAAGATGCCACAATATTGTCTTCTCTCCTTTATATGCAACGGCGCCCAGGG
GATTGTGAAAACACAACAGGTATCTATGAGGACAAGATGGTGGGCCTTTCTCGAGTCAAA
GTTTGGCGTAAAGAAACAAGGAAAGAAGAAAAGAAGAACTTTGTTTAA

Peptide Sequence

PEP ID

XP_016473033.1
PEP Infomation

PREDICTED: geranylgeranyl transferase type-2 subunit alpha-like isoform X2 [Nicotiana tabacum]
Sequence

MHGRPRKAPTTEEQEASAIKASKLRSLQSQFLQLHHNKIYTKEALDVSAKLLESNPEYYT
AWNYRKLAVQHNLNLPEADNNEESIKSILDEELRLVENALKRNFKSYGAWHHRKWVLSKG
HSSTDKELLLLGKFQKADARNFHAWNYRRFVTALKNIPDEKELEYTTERIYDNFSNYSAW
HNRSVLLSHLLKEKAKGYSPKDNVFTEEYEFVRNALFTDPDDQSGWFYHLWLLDQTVKLE
TLVSSWPPHGCNLSLPMDGSFGDCSFSPFTSLQSNTRTLPLILYFSEVVENICSSTVEVE
CESIVSNELVWRSLSGDETASTHAWLTDLNFPEEHANSLKAYQVKVSLARSQGIFSSTGV
HHGNSSHIAFTVSISPYRSEHVDLKNEEKISWNDESFCTHEAQFLESVLANLFHIERTKG
DEKVVDYQWNVTTVDNEIAYYRELLATMNCKIGKLTLARLLMAHDTLMSYTGTSHRNFSH
HTEILQLYDDLKKMDPAHFHYYQDEYSLVLLKQIISNQDLLLKHCCKYRDPSSPKINNFC
LRLNDLSLSRIGSMEKLLWVQVLDLSNNQLQSLEGGPASKRTLKDATILSSLLYMQRRPG
DCENTTGIYEDKMVGLSRVKVWRKETRKEEKKNFV

Transcript Sequence

Gene sequence data has not been registered.